Group A | Pts | Games | W | D | L | GS | GA | GS-GA |
 Anderlcht | 11 | 6 | 3 | 2 | 1 | 9 | 4 | 5 |
 Ajax | 11 | 6 | 3 | 2 | 1 | 8 | 6 | 2 |
 Dinamo Zg | 6 | 6 | 2 | 0 | 4 | 6 | 8 | -2 |
 Timişoara | 5 | 6 | 1 | 2 | 3 | 4 | 9 | -5 |
Group B | Pts | Games | W | D | L | GS | GA | GS-GA |
 Valencia | 12 | 6 | 3 | 3 | 0 | 12 | 8 | 4 |
 Lille | 10 | 6 | 3 | 1 | 2 | 15 | 9 | 6 |
 Genoa | 7 | 6 | 2 | 1 | 3 | 8 | 10 | -2 |
 Slavia | 3 | 6 | 0 | 3 | 3 | 5 | 13 | -8 |
Group C | Pts | Games | W | D | L | GS | GA | GS-GA |
 H TelAviv | 12 | 6 | 4 | 0 | 2 | 13 | 8 | 5 |
 Hamburg | 10 | 6 | 3 | 1 | 2 | 7 | 6 | 1 |
 Celtic | 6 | 6 | 1 | 3 | 2 | 7 | 7 | 0 |
 R Wien | 5 | 6 | 1 | 2 | 3 | 8 | 14 | -6 |
Group D | Pts | Games | W | D | L | GS | GA | GS-GA |
 Sporting | 11 | 6 | 3 | 2 | 1 | 8 | 6 | 2 |
| Hertha | 10 | 6 | 3 | 1 | 2 | 6 | 5 | 1 |
| Heerenveen | 8 | 6 | 2 | 2 | 2 | 11 | 7 | 4 |
 Ventspils | 3 | 6 | 0 | 3 | 3 | 3 | 10 | -7 |
Group E | Pts | Games | W | D | L | GS | GA | GS-GA |
| Roma | 13 | 6 | 4 | 1 | 1 | 10 | 5 | 5 |
 Fulham | 11 | 6 | 3 | 2 | 1 | 8 | 6 | 2 |
 Basel | 9 | 6 | 3 | 0 | 3 | 10 | 7 | 3 |
 CSKA Sofia | 1 | 6 | 0 | 1 | 5 | 2 | 12 | -10 |
Group F | Pts | Games | W | D | L | GS | GA | GS-GA |
 Gsaray | 13 | 6 | 4 | 1 | 1 | 12 | 4 | 8 |
 PAO | 12 | 6 | 4 | 0 | 2 | 7 | 4 | 3 |
| Dinamo | 6 | 6 | 2 | 0 | 4 | 4 | 12 | -8 |
| Sturm Graz | 4 | 6 | 1 | 1 | 4 | 3 | 6 | -3 |
Group G | Pts | Games | W | D | L | GS | GA | GS-GA |
| Salzburg | 18 | 6 | 6 | 0 | 0 | 9 | 2 | 7 |
| Villarreal | 9 | 6 | 3 | 0 | 3 | 8 | 6 | 2 |
| Lazio | 6 | 6 | 2 | 0 | 4 | 9 | 10 | -1 |
| Levski | 3 | 6 | 1 | 0 | 5 | 1 | 9 | -8 |
Group H | Pts | Games | W | D | L | GS | GA | GS-GA |
| Fenerbhce | 15 | 6 | 5 | 0 | 1 | 8 | 3 | 5 |
| Twente | 8 | 6 | 2 | 2 | 2 | 5 | 6 | -1 |
 Sheriff | 5 | 6 | 1 | 2 | 3 | 4 | 5 | -1 |
| FCSB | 4 | 6 | 0 | 4 | 2 | 3 | 6 | -3 |
Group I | Pts | Games | W | D | L | GS | GA | GS-GA |
| Benfica | 15 | 6 | 5 | 0 | 1 | 13 | 3 | 10 |
| Everton | 9 | 6 | 3 | 0 | 3 | 7 | 9 | -2 |
 BATE | 7 | 6 | 2 | 1 | 3 | 7 | 9 | -2 |
| AEK | 4 | 6 | 1 | 1 | 4 | 5 | 11 | -6 |
Group J | Pts | Games | W | D | L | GS | GA | GS-GA |
 Shakhtar | 13 | 6 | 4 | 1 | 1 | 14 | 3 | 11 |
| Cl.Brugge | 11 | 6 | 3 | 2 | 1 | 10 | 8 | 2 |
| Toulouse | 7 | 6 | 2 | 1 | 3 | 6 | 11 | -5 |
 Partizan | 3 | 6 | 1 | 0 | 5 | 6 | 14 | -8 |
Group K | Pts | Games | W | D | L | GS | GA | GS-GA |
| PSV | 14 | 6 | 4 | 2 | 0 | 8 | 3 | 5 |
 FC Cph. | 10 | 6 | 3 | 1 | 2 | 7 | 4 | 3 |
| Sparta | 7 | 6 | 2 | 1 | 3 | 7 | 9 | -2 |
| CFR Cluj | 3 | 6 | 1 | 0 | 5 | 4 | 10 | -6 |
Group L | Pts | Games | W | D | L | GS | GA | GS-GA |
| Werder | 16 | 6 | 5 | 1 | 0 | 17 | 6 | 11 |
| Athletic | 10 | 6 | 3 | 1 | 2 | 10 | 8 | 2 |
| Nacional | 5 | 6 | 1 | 2 | 3 | 11 | 12 | -1 |
| A Wien | 2 | 6 | 0 | 2 | 4 | 4 | 16 | -12 |
Round of 32 |
Everton 2 - Sporting 1
Sporting 3 - Everton 0
|
Villarreal 2 - Wolfsburg 2
Wolfsburg 4 - Villarreal 1
|
FC Cph. 1 - Marseille 3
Marseille 3 - FC Cph. 1
|
Hertha 1 - Benfica 1
Benfica 4 - Hertha 0
|
Fulham 2 - Shakhtar 1
Shakhtar 1 - Fulham 1
|
Twente 1 - Werder 0
Werder 4 - Twente 1
|
A.Madrid 1 - Gsaray 1
Gsaray 1 - A.Madrid 2
|
Athletic 1 - Anderlcht 1
Anderlcht 4 - Athletic 0
|
Hamburg 1 - PSV 0
PSV 3 - Hamburg 2
|
Cl.Brugge 1 - Valencia 0
Valencia 3 - Cl.Brugge 0
|
Standard 3 - Salzburg 2
Salzburg 0 - Standard 0
|
PAO 3 - Roma 2
Roma 2 - PAO 3
|
Rubin 3 - H TelAviv 0
H TelAviv 0 - Rubin 0
|
Liverpool 1 - Urziceni 0
Urziceni 1 - Liverpool 3
|
Lille 2 - Fenerbhce 1
Fenerbhce 1 - Lille 1
|
Ajax 1 - Juventus 2
Juventus 0 - Ajax 0
|
Round of 16 |
A.Madrid 0 - Sporting 0
Sporting 2 - A.Madrid 2
|
Valencia 1 - Werder 1
Werder 4 - Valencia 4
|
PAO 1 - Standard 3
Standard 1 - PAO 0
|
Rubin 1 - Wolfsburg 1
Wolfsburg 2 - Rubin 1
|
Juventus 3 - Fulham 1
Fulham 4 - Juventus 1
|
Benfica 1 - Marseille 1
Marseille 1 - Benfica 2
|
Hamburg 3 - Anderlcht 1
Anderlcht 4 - Hamburg 3
|
Lille 1 - Liverpool 0
Liverpool 3 - Lille 0
|
Quarter-finals |
Fulham 2 - Wolfsburg 1
Wolfsburg 0 - Fulham 1
|
Benfica 2 - Liverpool 1
Liverpool 4 - Benfica 1
|
Hamburg 2 - Standard 1
Standard 1 - Hamburg 3
|
Valencia 2 - A.Madrid 2
A.Madrid 0 - Valencia 0
|
Semi-finals |
A.Madrid 1 - Liverpool 0
Liverpool 2 - A.Madrid 1
|
Hamburg 0 - Fulham 0
Fulham 2 - Hamburg 1
|
Final |
A.Madrid 2 - Fulham 1
|
Europa League